Crayfish RNA-Seq dataset

A dataset containing the dated phylogeny, raw counts, gene lengths and sight condition for 17 species od Crayfishes.

Usage

crayfish

Format

A list, with:

tree

Dated species tree

counts

RNA-Seq count data

lengths

Gene lengths

sights

Wether a species can see (1) or is blind (0)

Source

https://github.com/i2bc/InterspeciesDE

References

Stern, D. B. and Crandall, K. A. (2018), 'The Evolution of Gene Expression Underlying Vision Loss in Cave Animals', Molecular Biology and Evolution 35(8), 2005–2014.

Bastide, P., Soneson, C., Stern, D. B., Lespinet, O. and Gallopin, M. (2023), 'A Phylogenetic Framework to Simulate Synthetic Interspecies RNA-Seq Data', Molecular Biology and Evolution 40(1), msac269.