Functions to test for differential expression between conditions at the tip of a phylogeny, combining Phylogenetic Comparative Methods implemented in phylolm with moderated statistics tailored for gene expression implemented in limma.
Installation
The development version can be installed from GitHub using the remotes package:
install.packages("remotes")
remotes::install_github(repo = "pbastide/phyloDE")Documentation
See package documentation (references and vignettes) here: https://pbastide.github.io/phyloDE/.
(Built with pkgdown).