Plot all the equivalent solutions.

plot.equivalent_shifts plots a representation of all the equivalent shifts allocations, with a representation of the shifts and their values, and a coloration of the branches in term of regimes.

Usage

# S3 method for class 'equivalent_shifts'
plot(
  x,
  trait = 1,
  show_shifts_values = TRUE,
  numbering = FALSE,
  colors_tips = NULL,
  nbr_col = 3,
  gray_scale = FALSE,
  edge.width = 2,
  shifts_cex = 1.2,
  ...
)

Arguments

x: an object of class equivalent_shifts, result of function equivalent_shifts
trait: (integer) the trait to be plotted, if multivariate. Default to 1.
show_shifts_values: whether to show the equivalent shifts values or not. Default to FALSE.
numbering: whether to number the solutions. Default to FALSE.
colors_tips: user-provided colors for the tips of the tree. A vector vector with as many colors as there are tips. Will be automatically computed if not provided.
nbr_col: the number of columns on which to display the plot. Default to 3.
gray_scale: if TRUE, the colors are replaced by a gray scale. Default to FALSE.
edge.width: width of the edge. Default to 1.
shifts_cex: if value_in_box=TRUE, the size of the text in the boxes. Default to 0.8.
...: further arguments to be passed to plot.phylo.

Value

A plot of the equivalent shifts allocations.

Details

This function uses function plot.phylo for the actual plotting of the trees.

Usage

Arguments

Value

Details

See also